morexGenes - Barley RNA-seq Database

Predicted Gene MLOC_40505

Gene IDMLOC_40505
Source Contig contig_2560483

Gene Data

|FPKM Values|
|CDS Structures|
|Gene Cluster Members|
|Homology to Models|

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MLOC_40505 FPKM values

FPKM by Treatment	FPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.

Treatment ID	Treatment Description	Rep 1 FPKM	Rep 2 FPKM	Rep 3 FPKM	Treatment FPKM
EMB	4-day embryos dissected from germinating grains	1.20384	2.76844	2.64069	0
LEA	Shoots from the seedlings (10 cm shoot stage)	1.96268	1.58196	1.59875	0
INF1	Young developing inflorescences (5mm)	5.80389	6.08345	5.13841	0
INF2	Developing inflorescences (1-1.5 cm)	5.01062	3.92027	3.54756	0
ROO	Roots from the seedlings (10 cm shoot stage)	1.09918	2.06369	2.31151	0
NOD	Developing tillers at six leaf stage, 3rd internode	2.0336	2.31498	3.21905	0
CAR5	Developing grain, bracts removed (5 DPA)	4.65619	4.54112	4.50544	0
CAR15	Developing grain, bracts removed (15 DPA)	2.82993	2.25644	1.92705	0

CDS Structure of MLOC_40505

Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK365455

Cluster member	Probe ID	FPKM by replicate	FPKM by treatment	Source Contig
AK365455	CUST_21100_PI427708080	None	None	None
MLOC_22499.1	None	Available	None	contig_1607697 (Mapped)
MLOC_2880.1	None	Available	None	contig_1256906 (Not mapped)
MLOC_33449.3	None	Available	None	contig_237464 (Mapped)
MLOC_33747.1	None	Available	None	contig_2399409 (Not mapped)
MLOC_35767.2	None	Available	None	contig_252128 (Not mapped)
MLOC_36016.1	None	Available	None	contig_2530629 (Not mapped)
MLOC_38288.1	None	Available	Available	contig_2550115 (Mapped)
MLOC_40505.2	None	Available	None	contig_2560483 (Mapped)
MLOC_41972.1	None	Available	None	contig_2616564 (Not mapped)
MLOC_43895.1	None	Available	None	contig_273304 (Mapped)
MLOC_50023.1	None	Available	None	contig_352781 (Not mapped)
MLOC_6144.1	None	Available	None	contig_1371210 (Not mapped)
MLOC_81206.1	None	Available	None	contig_950532 (Not mapped)

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP6	None	-	-	-	-	-
TAIR PP10	None	-	-	-	-	-