MLOC_40480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.264411.709114.086214.8421
LEAShoots from the seedlings (10 cm shoot stage)9.145542.651381.804894.28812
INF1Young developing inflorescences (5mm)29.047725.650732.766923.261
INF2Developing inflorescences (1-1.5 cm)14.011323.266820.074722.8876
ROORoots from the seedlings (10 cm shoot stage)7.713269.098328.0112110.6897
NODDeveloping tillers at six leaf stage, 3rd internode0.3533290.5526560.655033.22227
CAR5Developing grain, bracts removed (5 DPA)17.051922.819620.753219.5797
CAR15Developing grain, bracts removed (15 DPA)1.815571.112450.7547844.46166



CDS Structure of MLOC_40480






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40480.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40480.1CUST_5660_PI427708083AvailableAvailablecontig_2560121 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g05900.1 -1 7e-35 124 64/64 (100%) 13101.m00576 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
TAIR PP10 AT5G22880.1 -1 6e-34 121 61/64 (95%) | Symbols: H2B, HTB2 | histone B2 | chr5:7652130-7652567 REVERSE LENGTH=145