MLOC_40387 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.973129.07418.584937.88387
LEAShoots from the seedlings (10 cm shoot stage)85.3001172.579132.854108.992
INF1Young developing inflorescences (5mm)11.075811.322612.34788.93784
INF2Developing inflorescences (1-1.5 cm)10.661512.169413.043312.6412
ROORoots from the seedlings (10 cm shoot stage)3.074417.434678.797188.29673
NODDeveloping tillers at six leaf stage, 3rd internode77.000871.203875.8128247.093
CAR5Developing grain, bracts removed (5 DPA)24.806524.459724.888923.4733
CAR15Developing grain, bracts removed (15 DPA)7.861337.917448.7483116.7734



CDS Structure of MLOC_40387






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40387.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40387.1CUST_5651_PI427708083AvailableAvailablecontig_2558913 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g36570.1 -3 9e-158 461 233/246 (95%) 13102.m03991 protein ABC1 family domain containing protein, putative, expressed
TAIR PP10 AT5G64940.2 -3 8e-146 430 222/247 (90%) | Symbols: ATATH13, ATH13 | ABC2 homolog 13 | chr5:25949116-25953326 FORWARD LENGTH=761