MLOC_40251 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5010020.3899450.2679690.357845
LEAShoots from the seedlings (10 cm shoot stage)0.7116041.287551.034340.720561
INF1Young developing inflorescences (5mm)0.4839130.8362370.4357020.424679
INF2Developing inflorescences (1-1.5 cm)0.903851.069291.142910.937858
ROORoots from the seedlings (10 cm shoot stage)0.3532810.8162190.961430.715625
NODDeveloping tillers at six leaf stage, 3rd internode0.5436181.398932.206514.1535
CAR5Developing grain, bracts removed (5 DPA)0.7110570.860560.490060.562206
CAR15Developing grain, bracts removed (15 DPA)0.2508510.2667860.3150730.541913



CDS Structure of MLOC_40251






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40251.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40251.1CUST_17669_PI427708080AvailableAvailablecontig_2557512 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g31620.1 +3 3e-81 270 134/185 (72%) 13111.m03065 protein OsFBL55 - F-box domain and LRR containing protein, expressed
TAIR PP10 AT3G26810.1 +3 3e-62 218 109/185 (59%) | Symbols: AFB2 | auxin signaling F-box 2 | chr3:9868342-9870464 FORWARD LENGTH=575