MLOC_40211 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1675120.14281100.169449
LEAShoots from the seedlings (10 cm shoot stage)000.2171970.147693
INF1Young developing inflorescences (5mm)0.4598530.294711.503480.437917
INF2Developing inflorescences (1-1.5 cm)0.4381810.4240060.3160250.381028
ROORoots from the seedlings (10 cm shoot stage)00.15343200.517853
NODDeveloping tillers at six leaf stage, 3rd internode0.1412440.147230.1188290.401842
CAR5Developing grain, bracts removed (5 DPA)0.29220900.3299240.282876
CAR15Developing grain, bracts removed (15 DPA)00.17178800.279628



CDS Structure of MLOC_40211






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40211.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40211.1CUST_5625_PI427708083AvailableAvailablecontig_2557048 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g47605.1 -3 2e-44 158 78/116 (67%) 13102.m05366 protein expressed protein
TAIR PP10 AT5G27740.1 -3 8e-11 60 31/102 (30%) | Symbols: EMB161, EMB2775, EMB251, RFC3 | ATPase family associated with various cellular activities (AAA) | chr5:9823831-9826869 FORWARD LENGTH=354