MLOC_40119 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.8393662.17392
LEAShoots from the seedlings (10 cm shoot stage)1.88396002.00562
INF1Young developing inflorescences (5mm)0.8975380.5091873.916124.45245
INF2Developing inflorescences (1-1.5 cm)2.711350.8406334.1384910.339
ROORoots from the seedlings (10 cm shoot stage)1.317231.4147904.92512
NODDeveloping tillers at six leaf stage, 3rd internode0.7714390.9363922.3532613.2441
CAR5Developing grain, bracts removed (5 DPA)1.732362.120171.055359.3817
CAR15Developing grain, bracts removed (15 DPA)0.365430.4303521.628566.39191



CDS Structure of MLOC_40119






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_40119.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_40119.1CUST_11818_PI427708080AvailableAvailablecontig_255631 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10770.1 -3 5e-16 71 30/41 (73%) 13103.m01208 protein helix-loop-helix DNA-binding domain containing protein
TAIR PP10 AT4G33880.1 -3 3e-15 69 30/41 (73%) | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239566-16241052 REVERSE LENGTH=352