- Predicted Gene MLOC_40119
MLOC_40119 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0 | 0.839366 | 2.17392 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.88396 | 0 | 0 | 2.00562 |
INF1 | Young developing inflorescences (5mm) | 0.897538 | 0.509187 | 3.91612 | 4.45245 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.71135 | 0.840633 | 4.13849 | 10.339 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.31723 | 1.41479 | 0 | 4.92512 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.771439 | 0.936392 | 2.35326 | 13.2441 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.73236 | 2.12017 | 1.05535 | 9.3817 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.36543 | 0.430352 | 1.62856 | 6.39191 |
CDS Structure of MLOC_40119
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_40119.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g10770.1 |
-3 |
5e-16 |
71 |
30/41 (73%) |
13103.m01208 protein helix-loop-helix DNA-binding domain containing protein |
TAIR PP10 |
AT4G33880.1 |
-3 |
3e-15 |
69 |
30/41 (73%) |
| Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr4:16239566-16241052 REVERSE LENGTH=352 |