MLOC_4011 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.039919.357217.606816.7957
LEAShoots from the seedlings (10 cm shoot stage)19.429914.96416.145813.2961
INF1Young developing inflorescences (5mm)16.205717.989117.321315.5265
INF2Developing inflorescences (1-1.5 cm)13.320913.000914.678714.9901
ROORoots from the seedlings (10 cm shoot stage)8.572259.8915814.036611.0803
NODDeveloping tillers at six leaf stage, 3rd internode9.780339.508619.3415522.4225
CAR5Developing grain, bracts removed (5 DPA)19.135219.883519.473318.8829
CAR15Developing grain, bracts removed (15 DPA)9.5916610.30349.6877224.0425



CDS Structure of MLOC_4011






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4011.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4011.1CUST_5612_PI427708083AvailableAvailablecontig_134576 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g39650.1 -2 4e-46 163 109/180 (61%) 13111.m03917 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT5G50650.1 -2 1e-13 71 37/75 (49%) Transducin/WD40 repeat-like superfamily protein | chr5:20610212-20612061 FORWARD LENGTH=383