MLOC_39957 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3677430.3373870.4180790.284262
LEAShoots from the seedlings (10 cm shoot stage)0.5876440.7851590.6872240.505572
INF1Young developing inflorescences (5mm)0.3963740.3683511.058710.394637
INF2Developing inflorescences (1-1.5 cm)1.096770.95120.6508460.854306
ROORoots from the seedlings (10 cm shoot stage)0.4759690.9608450.6618720.841978
NODDeveloping tillers at six leaf stage, 3rd internode0.2746190.623390.6702151.98243
CAR5Developing grain, bracts removed (5 DPA)0.4848450.5210241.187570.555897
CAR15Developing grain, bracts removed (15 DPA)0.3486310.2667820.281880.572575



CDS Structure of MLOC_39957






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39957.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375261NoneNoneNoneNone
MLOC_39957.1CUST_2552_PI427708080AvailableAvailablecontig_2555626 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g20970.1 +3 2e-61 209 112/188 (60%) 13101.m02229 protein invertase/pectin methylesterase inhibitor family protein, putative, expressed
TAIR PP10None-----