MLOC_39949 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains546.54247.048317.038252.523
LEAShoots from the seedlings (10 cm shoot stage)160.41789.6224133.43579.8657
INF1Young developing inflorescences (5mm)349.884398.129444.374218.21
INF2Developing inflorescences (1-1.5 cm)206.15240.46218.342171.769
ROORoots from the seedlings (10 cm shoot stage)432.193235.952277.734221.941
NODDeveloping tillers at six leaf stage, 3rd internode18.6429.468582.459281.2528
CAR5Developing grain, bracts removed (5 DPA)205.339237.255246.173145.639
CAR15Developing grain, bracts removed (15 DPA)67.478463.472660.611499.1716



CDS Structure of MLOC_39949






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by AK250939.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250939.1CUST_18932_PI427708080NoneNoneNone
MLOC_28912.1NoneAvailableNonecontig_1958744 (Not mapped)
MLOC_31196.1NoneAvailableNonecontig_2166237 (Not mapped)
MLOC_32123.1NoneAvailableNonecontig_2254308 (Mapped)
MLOC_35285.1NoneAvailableNonecontig_2470664 (Not mapped)
MLOC_39949.1NoneAvailableAvailablecontig_2555584 (Mapped)
MLOC_62923.1NoneAvailableNonecontig_470984 (Not mapped)
MLOC_63138.1NoneAvailableNonecontig_473095 (Not mapped)
MLOC_74272.1NoneAvailableNonecontig_65495 (Mapped)
MLOC_80249.1NoneAvailableNonecontig_894933 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10None-----