MLOC_39912 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.345864.871081.928662.6707
LEAShoots from the seedlings (10 cm shoot stage)5.377731.86932.435272.30175
INF1Young developing inflorescences (5mm)12.307311.510914.49947.44876
INF2Developing inflorescences (1-1.5 cm)13.100315.899611.315711.9095
ROORoots from the seedlings (10 cm shoot stage)2.803492.019251.360431.89725
NODDeveloping tillers at six leaf stage, 3rd internode2.027883.211973.440217.72715
CAR5Developing grain, bracts removed (5 DPA)4.4065.589166.434133.83694
CAR15Developing grain, bracts removed (15 DPA)0.6024070.8246791.503011.44037



CDS Structure of MLOC_39912






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39912.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39912.1CUST_12322_PI427708083AvailableAvailablecontig_2555397 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g10190.1 +3 1e-29 115 56/69 (81%) 13110.m00915 protein ATP-binding region, ATPase-like domain containing protein, expressed
TAIR PP10 AT4G36290.1 +3 5e-22 93 41/61 (67%) | Symbols: CRT1 | compromised recognition of TCV 1 | chr4:17169669-17173187 REVERSE LENGTH=635