MLOC_39877 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.495255.05846.098554.98192
LEAShoots from the seedlings (10 cm shoot stage)2.936073.923492.832352.68885
INF1Young developing inflorescences (5mm)3.707014.095053.827263.39379
INF2Developing inflorescences (1-1.5 cm)6.897723.884172.972975.31576
ROORoots from the seedlings (10 cm shoot stage)5.851585.113474.55716.22812
NODDeveloping tillers at six leaf stage, 3rd internode6.059336.6124817.521826.3753
CAR5Developing grain, bracts removed (5 DPA)2.30152.376842.364492.40884
CAR15Developing grain, bracts removed (15 DPA)2.153751.735831.956924.76422



CDS Structure of MLOC_39877






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39877.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39877.1CUST_12321_PI427708083AvailableAvailablecontig_2555241 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g36670.1 +2 2e-46 171 103/114 (90%) 13112.m03756 protein F-box/LRR-repeat protein 3, putative, expressed
TAIR PP10 AT5G27920.1 +2 2e-24 105 64/114 (56%) F-box family protein | chr5:9942063-9944507 REVERSE LENGTH=642