MLOC_39847 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2647660.1774390.4399290.240548
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0478623000.0579693
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.1028180.086561600.356956
CAR5Developing grain, bracts removed (5 DPA)59.823661.773562.251655.1193
CAR15Developing grain, bracts removed (15 DPA)25.947519.609725.979649.0983



CDS Structure of MLOC_39847






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39847.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39847.1CUST_5578_PI427708083AvailableAvailablecontig_2555054 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54160.2 +2 5e-61 203 146/238 (61%) 13102.m12340 protein AP2 domain containing protein, expressed
TAIR PP10None-----