MLOC_39822 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.065137.66847.762337.551
LEAShoots from the seedlings (10 cm shoot stage)37.738646.161944.087531.1583
INF1Young developing inflorescences (5mm)25.957234.235833.218720.8438
INF2Developing inflorescences (1-1.5 cm)28.853934.158424.211228.5581
ROORoots from the seedlings (10 cm shoot stage)51.599732.766232.178538.8724
NODDeveloping tillers at six leaf stage, 3rd internode26.802630.141918.851582.4426
CAR5Developing grain, bracts removed (5 DPA)38.099337.401538.15130.3276
CAR15Developing grain, bracts removed (15 DPA)8.017596.921677.6133115.0332



CDS Structure of MLOC_39822






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39822.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39822.1CUST_5574_PI427708083AvailableAvailablecontig_255490 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 +1 7e-80 249 116/141 (82%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G10410.1 +1 3e-69 220 101/141 (72%) | Symbols: SCPL49, CPY | SERINE CARBOXYPEPTIDASE-LIKE 49 | chr3:3235518-3238063 REVERSE LENGTH=516