MLOC_39807 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.313114.535514.658113.4003
LEAShoots from the seedlings (10 cm shoot stage)13.59058.289369.758669.05423
INF1Young developing inflorescences (5mm)33.617333.191431.417225.1549
INF2Developing inflorescences (1-1.5 cm)28.658229.601431.848230.3728
ROORoots from the seedlings (10 cm shoot stage)6.0859812.962715.662914.0109
NODDeveloping tillers at six leaf stage, 3rd internode3.172384.703479.5930519.2663
CAR5Developing grain, bracts removed (5 DPA)17.791218.423516.599215.9852
CAR15Developing grain, bracts removed (15 DPA)6.331495.871926.0159712.263



CDS Structure of MLOC_39807






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39807.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251776.1NoneNoneNoneNone
MLOC_39807.1CUST_2544_PI427708080AvailableAvailablecontig_2554832 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g27870.1 +1 0.0 785 407/519 (78%) 13105.m02862 protein expressed protein
TAIR PP10 AT5G58450.1 +1 2e-121 388 240/529 (45%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:23626826-23632071 FORWARD LENGTH=1065