MLOC_39800 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.662063.784223.040222.62508
LEAShoots from the seedlings (10 cm shoot stage)4.388836.118814.10423.57715
INF1Young developing inflorescences (5mm)2.604152.620313.920562.29068
INF2Developing inflorescences (1-1.5 cm)8.635955.405355.765356.71176
ROORoots from the seedlings (10 cm shoot stage)2.310013.59814.469933.52557
NODDeveloping tillers at six leaf stage, 3rd internode3.467472.89243.75497.41879
CAR5Developing grain, bracts removed (5 DPA)4.428473.220063.98673.41322
CAR15Developing grain, bracts removed (15 DPA)3.941673.567973.141667.74104



CDS Structure of MLOC_39800






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39800.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39800.1NoneAvailableAvailablecontig_2554806 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g70380.1 +3 3e-27 114 56/64 (88%) 13101.m07647 protein serine palmitoyltransferase 2, putative, expressed
TAIR PP10 AT5G23670.2 +3 1e-20 94 45/64 (70%) | Symbols: LCB2 | long chain base2 | chr5:7981889-7985037 FORWARD LENGTH=489