MLOC_39797 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.5686819.299820.766421.9843
LEAShoots from the seedlings (10 cm shoot stage)13.219542.211416.506124.8639
INF1Young developing inflorescences (5mm)22.983420.566532.334633.7632
INF2Developing inflorescences (1-1.5 cm)50.203239.155132.200472.8289
ROORoots from the seedlings (10 cm shoot stage)017.23389.9509723.8487
NODDeveloping tillers at six leaf stage, 3rd internode11.724916.595922.855772.0892
CAR5Developing grain, bracts removed (5 DPA)23.614326.29839.786139.1777
CAR15Developing grain, bracts removed (15 DPA)27.416921.100412.703568.1382



CDS Structure of MLOC_39797






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39797.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39797.1CUST_5572_PI427708083AvailableAvailablecontig_25548 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g09120.1 +1 4e-25 98 44/46 (96%) 13112.m00966 protein mRNA-capping enzyme, putative, expressed
TAIR PP10 AT3G09100.1 +1 2e-16 72 31/43 (72%) mRNA capping enzyme family protein | chr3:2790038-2792913 REVERSE LENGTH=471