MLOC_39738 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6143821.471051.171591.12194
LEAShoots from the seedlings (10 cm shoot stage)1.670481.01590.9000221.00443
INF1Young developing inflorescences (5mm)4.786674.463634.523393.69356
INF2Developing inflorescences (1-1.5 cm)7.482176.459545.751976.93472
ROORoots from the seedlings (10 cm shoot stage)0.2590390.6890311.075790.75386
NODDeveloping tillers at six leaf stage, 3rd internode0.1175040.1762720.2519850.604582
CAR5Developing grain, bracts removed (5 DPA)1.866182.013982.329781.88888
CAR15Developing grain, bracts removed (15 DPA)1.711.081751.075013.01084



CDS Structure of MLOC_39738






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39738.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39738.1CUST_11788_PI427708080AvailableAvailablecontig_2554492 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g47570.1 +3 0.0 1524 756/966 (78%) 13106.m05051 protein PPR repeat containing protein, expressed
TAIR PP10 AT5G65560.1 +3 5e-162 509 281/757 (37%) Pentatricopeptide repeat (PPR) superfamily protein | chr5:26201012-26203759 REVERSE LENGTH=915