MLOC_39721 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.486083.947092.913492.98228
LEAShoots from the seedlings (10 cm shoot stage)1.637412.071194.116231.7688
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)6.257457.219774.71996.51256
NODDeveloping tillers at six leaf stage, 3rd internode0.5239160.2001210.3606690.555732
CAR5Developing grain, bracts removed (5 DPA)0.3415780.5292840.2319690.33955
CAR15Developing grain, bracts removed (15 DPA)000.2611130.577439



CDS Structure of MLOC_39721






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39721.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39721.2CUST_12315_PI427708083AvailableAvailablecontig_2554420 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g11560.2 +1 3e-31 116 76/90 (84%) 13105.m01252 protein aquaporin protein, putative, expressed
TAIR PP10 AT4G18910.1 +1 6e-22 92 48/74 (65%) | Symbols: NIP1;2, NLM2, ATNLM2 | NOD26-like intrinsic protein 1;2 | chr4:10366211-10368179 FORWARD LENGTH=294