MLOC_39708 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains000.0676240.0381404
LEAShoots from the seedlings (10 cm shoot stage)19.738553.816845.648930.6048
INF1Young developing inflorescences (5mm)00.04513220.1104410.0721517
INF2Developing inflorescences (1-1.5 cm)00.03232690.04732260.0721389
ROORoots from the seedlings (10 cm shoot stage)00.047836900.199108
NODDeveloping tillers at six leaf stage, 3rd internode3.455672.6540721.013518.3022
CAR5Developing grain, bracts removed (5 DPA)000.04776950.0356822
CAR15Developing grain, bracts removed (15 DPA)0.1391960.095102700.361267



CDS Structure of MLOC_39708






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39708.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39708.1CUST_5560_PI427708083AvailableAvailablecontig_2554377 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g30230.1 +1 8e-117 351 189/340 (56%) 13109.m03018 protein disease resistance protein RPM1, putative, expressed
TAIR PP10 AT3G07040.1 +1 6e-41 157 105/369 (28%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926