MLOC_39693 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.235416.007355.751176.89768
LEAShoots from the seedlings (10 cm shoot stage)9.05538.18177.585577.66438
INF1Young developing inflorescences (5mm)6.913676.212927.524186.57478
INF2Developing inflorescences (1-1.5 cm)12.170710.628111.226813.8199
ROORoots from the seedlings (10 cm shoot stage)1.820561.484981.114111.9588
NODDeveloping tillers at six leaf stage, 3rd internode5.1038213.539618.963351.3828
CAR5Developing grain, bracts removed (5 DPA)2.724562.761681.583112.64364
CAR15Developing grain, bracts removed (15 DPA)0.1569290.08628010.2301030.383719



CDS Structure of MLOC_39693






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39693.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39693.1CUST_11786_PI427708080AvailableAvailablecontig_2554333 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g35644.1 +1 1e-50 168 85/119 (71%) 13110.m03205 protein expressed protein
TAIR PP10 AT1G28100.2 +1 9e-20 85 51/107 (48%) unknown protein; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9802120-9803981 FORWARD LENGTH=282