MLOC_39690 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains107.82477.36881.621882.2316
LEAShoots from the seedlings (10 cm shoot stage)37.382124.976634.864825.5323
INF1Young developing inflorescences (5mm)101.503103.754114.00986.8623
INF2Developing inflorescences (1-1.5 cm)83.72395.5806111.97797.4981
ROORoots from the seedlings (10 cm shoot stage)118.44880.0225118.16395.9486
NODDeveloping tillers at six leaf stage, 3rd internode15.950415.960626.251750.5347
CAR5Developing grain, bracts removed (5 DPA)55.857566.572657.185654.7344
CAR15Developing grain, bracts removed (15 DPA)12.970813.984614.26431.295



CDS Structure of MLOC_39690






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39690.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366855NoneNoneNoneNone
MLOC_39690.1CUST_2543_PI427708080AvailableAvailablecontig_2554328 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32274.1 +2 3e-83 251 119/130 (92%) 13109.m03211 protein 30S ribosomal protein S16, putative, expressed
TAIR PP10 AT5G56940.1 +2 4e-69 214 100/134 (75%) Ribosomal protein S16 family protein | chr5:23030879-23032200 FORWARD LENGTH=135