MLOC_39670 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.188090.6770151.100771.05912
LEAShoots from the seedlings (10 cm shoot stage)8.7765318.981731.471413.7555
INF1Young developing inflorescences (5mm)0.2369670.6743530.2884380.301426
INF2Developing inflorescences (1-1.5 cm)0.07444270.4212690.6788110.32386
ROORoots from the seedlings (10 cm shoot stage)4.078812.566932.146972.68003
NODDeveloping tillers at six leaf stage, 3rd internode12.321418.39717.869243.0896
CAR5Developing grain, bracts removed (5 DPA)2.284652.169093.653092.06909
CAR15Developing grain, bracts removed (15 DPA)4.048333.363932.611757.53141



CDS Structure of MLOC_39670






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39670.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39670.1CUST_5551_PI427708083AvailableAvailablecontig_2554250 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g40670.1 +1 2e-32 119 57/59 (97%) 13104.m03968 protein expressed protein
TAIR PP10 AT5G40500.2 +1 4e-25 98 44/59 (75%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16227984-16228518 FORWARD LENGTH=114