MLOC_39661 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.036816.152515.532318.1651
LEAShoots from the seedlings (10 cm shoot stage)17.338218.515126.749117.0366
INF1Young developing inflorescences (5mm)15.093221.191119.352317.1048
INF2Developing inflorescences (1-1.5 cm)17.072723.708515.722823.5291
ROORoots from the seedlings (10 cm shoot stage)24.97117.283211.664121.4474
NODDeveloping tillers at six leaf stage, 3rd internode16.15920.787126.337263.1469
CAR5Developing grain, bracts removed (5 DPA)8.471458.589796.453338.68128
CAR15Developing grain, bracts removed (15 DPA)1.277422.160351.968934.73447



CDS Structure of MLOC_39661






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39661.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39661.1CUST_17665_PI427708080AvailableAvailablecontig_2554230 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g48444.1 -2 6e-77 239 137/200 (69%) 13101.m05028 protein OsIAA5 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT2G22670.2 -2 2e-43 153 74/123 (60%) | Symbols: IAA8 | indoleacetic acid-induced protein 8 | chr2:9637136-9638459 FORWARD LENGTH=319