MLOC_39647 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.91293.239584.192243.51177
LEAShoots from the seedlings (10 cm shoot stage)4.297232.545593.287492.25092
INF1Young developing inflorescences (5mm)3.170842.838453.950772.11471
INF2Developing inflorescences (1-1.5 cm)1.786942.289851.877141.71986
ROORoots from the seedlings (10 cm shoot stage)7.156025.218184.873664.66715
NODDeveloping tillers at six leaf stage, 3rd internode4.318462.949039.59149.46363
CAR5Developing grain, bracts removed (5 DPA)4.107954.355814.821533.23007
CAR15Developing grain, bracts removed (15 DPA)2.287371.958181.876163.92332



CDS Structure of MLOC_39647






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39647.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39647.1CUST_12311_PI427708083AvailableAvailablecontig_2554165 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g20860.1 +1 8e-53 181 115/126 (91%) 13109.m01990 protein calmodulin-binding protein, putative, expressed
TAIR PP10 AT5G40190.1 +1 3e-24 100 57/100 (57%) RNA ligase/cyclic nucleotide phosphodiesterase family protein | chr5:16069298-16069849 REVERSE LENGTH=183