MLOC_39632 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.887639.805938.100028.79308
LEAShoots from the seedlings (10 cm shoot stage)21.631448.164167.2333.1819
INF1Young developing inflorescences (5mm)6.898776.972264.821575.47419
INF2Developing inflorescences (1-1.5 cm)19.58834.9931510.350212.8024
ROORoots from the seedlings (10 cm shoot stage)28.153116.965724.336318.9779
NODDeveloping tillers at six leaf stage, 3rd internode28.39937.005279.5459114.074
CAR5Developing grain, bracts removed (5 DPA)5.973794.543154.347034.94145
CAR15Developing grain, bracts removed (15 DPA)2.435092.09441.961555.47583



CDS Structure of MLOC_39632






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39632.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359068NoneNoneNoneNone
MLOC_39632.1CUST_2541_PI427708080AvailableAvailablecontig_2554106 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g39360.1 -3 7e-97 296 189/272 (69%) 13102.m04351 protein B-box zinc finger family protein, putative, expressed
TAIR PP10 AT1G06040.1 -3 2e-51 176 131/262 (50%) | Symbols: STO | B-box zinc finger family protein | chr1:1828662-1829659 REVERSE LENGTH=248