MLOC_3959 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 13.7061 | 20.1382 | 18.3112 | 20.5072 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 29.126 | 15.5966 | 16.9995 | 18.9844 |
| INF1 | Young developing inflorescences (5mm) | 22.2527 | 20.8462 | 20.157 | 19.1305 |
| INF2 | Developing inflorescences (1-1.5 cm) | 16.2934 | 16.4997 | 15.1729 | 19.1023 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 2.79777 | 4.51998 | 4.47572 | 5.96225 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 5.54315 | 7.25403 | 9.0182 | 26.5464 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 15.0839 | 14.1489 | 15.8811 | 16.0386 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 2.22466 | 2.62525 | 2.46609 | 6.07923 |
CDS Structure of MLOC_3959
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_3959.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os05g47850.1 |
+1 |
0.0 |
1040 |
567/684 (83%) |
13105.m05071 protein chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed |
| TAIR PP10 |
AT3G18390.1 |
+1 |
0.0 |
761 |
417/669 (62%) |
| Symbols: EMB1865 | CRS1 / YhbY (CRM) domain-containing protein | chr3:6313572-6317584 FORWARD LENGTH=848 |
