MLOC_39569 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.453871.180931.12611.26445
LEAShoots from the seedlings (10 cm shoot stage)1.776870.7711471.149931.08957
INF1Young developing inflorescences (5mm)7.045887.404277.031896.09609
INF2Developing inflorescences (1-1.5 cm)12.38958.173911.054611.3178
ROORoots from the seedlings (10 cm shoot stage)2.77972.664822.257783.2112
NODDeveloping tillers at six leaf stage, 3rd internode0.2495710.2696240.8027781.20878
CAR5Developing grain, bracts removed (5 DPA)3.971684.252664.643014.18147
CAR15Developing grain, bracts removed (15 DPA)2.148772.205931.938334.91146



CDS Structure of MLOC_39569






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39569.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373710NoneNoneNoneNone
MLOC_39569.1CUST_2539_PI427708080AvailableAvailablecontig_2553891 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g16870.1 -2 5e-64 218 154/383 (40%) 13109.m01612 protein A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence
TAIR PP10 AT5G19000.1 -2 5e-40 151 104/317 (33%) | Symbols: ATBPM1, BPM1 | BTB-POZ and MATH domain 1 | chr5:6342563-6344641 FORWARD LENGTH=407