MLOC_39563 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.346625.745276.587627.07622
LEAShoots from the seedlings (10 cm shoot stage)7.145084.677994.28725.56082
INF1Young developing inflorescences (5mm)23.05322.375624.629422.1639
INF2Developing inflorescences (1-1.5 cm)68.374367.300466.508485.0036
ROORoots from the seedlings (10 cm shoot stage)2.817014.37884.853656.87335
NODDeveloping tillers at six leaf stage, 3rd internode9.6248414.437318.68666.9233
CAR5Developing grain, bracts removed (5 DPA)34.893933.586732.498238.7857
CAR15Developing grain, bracts removed (15 DPA)8.273117.213028.8727220.4602



CDS Structure of MLOC_39563






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39563.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39563.1CUST_5532_PI427708083AvailableAvailablecontig_2553862 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g03570.1 +3 6e-114 347 181/263 (69%) 13101.m00306 protein transcription factor X1, putative, expressed
TAIR PP10 AT1G15910.1 +3 1e-73 243 128/256 (50%) XH/XS domain-containing protein | chr1:5465951-5468723 FORWARD LENGTH=634