MLOC_39555 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.184111.417591.26491.45672
LEAShoots from the seedlings (10 cm shoot stage)1.3651.244682.695211.26947
INF1Young developing inflorescences (5mm)2.050932.355782.029631.71926
INF2Developing inflorescences (1-1.5 cm)1.80761.534731.517171.69214
ROORoots from the seedlings (10 cm shoot stage)2.168041.500621.449781.59153
NODDeveloping tillers at six leaf stage, 3rd internode0.5850330.8708781.737952.4837
CAR5Developing grain, bracts removed (5 DPA)1.236731.711311.622051.41818
CAR15Developing grain, bracts removed (15 DPA)0.2923930.3114940.3057910.695377



CDS Structure of MLOC_39555






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39555.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358421NoneNoneNoneNone
MLOC_39555.1CUST_2538_PI427708080AvailableAvailablecontig_2553834 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g20354.1 -1 5e-101 313 154/195 (79%) 13106.m02176 protein PPR repeat domain containing protein, putative, expressed
TAIR PP10 AT5G03560.2 -1 5e-65 219 118/197 (60%) Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:901452-902719 REVERSE LENGTH=363