- Predicted Gene MLOC_39555
MLOC_39555 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_39555_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_39555_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.18411 | 1.41759 | 1.2649 | 1.45672 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.365 | 1.24468 | 2.69521 | 1.26947 |
INF1 | Young developing inflorescences (5mm) | 2.05093 | 2.35578 | 2.02963 | 1.71926 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.8076 | 1.53473 | 1.51717 | 1.69214 |
ROO | Roots from the seedlings (10 cm shoot stage) | 2.16804 | 1.50062 | 1.44978 | 1.59153 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.585033 | 0.870878 | 1.73795 | 2.4837 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.23673 | 1.71131 | 1.62205 | 1.41818 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.292393 | 0.311494 | 0.305791 | 0.695377 |
CDS Structure of MLOC_39555
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_39555.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g20354.1 |
-1 |
5e-101 |
313 |
154/195 (79%) |
13106.m02176 protein PPR repeat domain containing protein, putative, expressed |
TAIR PP10 |
AT5G03560.2 |
-1 |
5e-65 |
219 |
118/197 (60%) |
Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:901452-902719 REVERSE LENGTH=363 |