MLOC_39554 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.694340.4272020.1339970.415267
LEAShoots from the seedlings (10 cm shoot stage)0.27702400.09699560.162385
INF1Young developing inflorescences (5mm)7.554528.072867.651476.99403
INF2Developing inflorescences (1-1.5 cm)5.963147.320247.228237.8151
ROORoots from the seedlings (10 cm shoot stage)0.3482040.5699290.6119590.596319
NODDeveloping tillers at six leaf stage, 3rd internode0.0334690.005062640.02097990.0218566
CAR5Developing grain, bracts removed (5 DPA)0.02537180.09688390.02435870.055343
CAR15Developing grain, bracts removed (15 DPA)0.05540740.04313530.05310120.132074



CDS Structure of MLOC_39554






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39554.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39554.2CUST_11775_PI427708080AvailableAvailablecontig_2553830 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g42870.1 +2 4e-117 356 197/298 (66%) 13102.m04754 protein MYB family transcription factor, putative, expressed
TAIR PP10 AT3G61250.1 +2 2e-68 228 130/216 (60%) | Symbols: AtMYB17, MYB17 | myb domain protein 17 | chr3:22671306-22672551 FORWARD LENGTH=299