MLOC_3948 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.9339721.024320.7977951.17959
LEAShoots from the seedlings (10 cm shoot stage)0.38308900.2468020.288988
INF1Young developing inflorescences (5mm)2.806483.308823.668533.42333
INF2Developing inflorescences (1-1.5 cm)3.148563.389083.684164.66258
ROORoots from the seedlings (10 cm shoot stage)0.7095890.6515650.6667681.01632
NODDeveloping tillers at six leaf stage, 3rd internode0.06906680.01850910.01493430.065148
CAR5Developing grain, bracts removed (5 DPA)0.8111540.659470.5660980.836816
CAR15Developing grain, bracts removed (15 DPA)12.139714.524711.448337.5668



CDS Structure of MLOC_3948






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_3948.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_3948.1CUST_11767_PI427708080AvailableAvailablecontig_134471 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g72190.1 +3 5e-64 218 181/390 (46%) 13101.m07863 protein expressed protein
TAIR PP10 AT2G38800.1 +3 8e-23 102 47/69 (68%) Plant calmodulin-binding protein-related | chr2:16216999-16218837 FORWARD LENGTH=612