MLOC_39421 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.156217.813417.642616.4094
LEAShoots from the seedlings (10 cm shoot stage)15.06862.39034.787095.74797
INF1Young developing inflorescences (5mm)5.013322.861494.021033.37639
INF2Developing inflorescences (1-1.5 cm)4.722228.384068.434897.65944
ROORoots from the seedlings (10 cm shoot stage)4.967267.869637.958987.28094
NODDeveloping tillers at six leaf stage, 3rd internode2.297073.41770.007786465.95283
CAR5Developing grain, bracts removed (5 DPA)24.394322.590622.46821.8658
CAR15Developing grain, bracts removed (15 DPA)0.1529980.0515280.06222790.231171



CDS Structure of MLOC_39421






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39421.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249021.1NoneNoneNoneNone
MLOC_39421.1CUST_2533_PI427708080AvailableAvailablecontig_2553346 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40810.1 -3 3e-108 333 260/390 (67%) 13110.m03788 protein GATA zinc finger domain containing protein, expressed
TAIR PP10 AT2G45050.1 -3 4e-38 142 71/98 (72%) | Symbols: GATA2 | GATA transcription factor 2 | chr2:18582958-18583845 FORWARD LENGTH=264