MLOC_39415 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.875313.82816.083713.1406
LEAShoots from the seedlings (10 cm shoot stage)12.577514.639521.593411.504
INF1Young developing inflorescences (5mm)7.287927.061398.269084.86893
INF2Developing inflorescences (1-1.5 cm)5.371665.132595.144854.47878
ROORoots from the seedlings (10 cm shoot stage)31.136317.723223.983320.9776
NODDeveloping tillers at six leaf stage, 3rd internode30.571528.174630.534580.0703
CAR5Developing grain, bracts removed (5 DPA)7.172037.788528.788465.72254
CAR15Developing grain, bracts removed (15 DPA)3.679934.631864.068466.71611



CDS Structure of MLOC_39415






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39415.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39415.1CUST_12304_PI427708083AvailableAvailablecontig_2553308 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g42410.2 -3 3e-53 183 95/109 (87%) 13108.m04566 protein transketolase, putative, expressed
TAIR PP10 AT5G50850.1 -3 1e-48 170 89/109 (82%) | Symbols: MAB1 | Transketolase family protein | chr5:20689671-20692976 FORWARD LENGTH=363