MLOC_39391 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains735.011690.548633.136914.294
LEAShoots from the seedlings (10 cm shoot stage)300.004230.489229.055265.791
INF1Young developing inflorescences (5mm)996.778998.042987.6621072.8
INF2Developing inflorescences (1-1.5 cm)794.537706.79756.6361022.94
ROORoots from the seedlings (10 cm shoot stage)351.64509.945615.657904.904
NODDeveloping tillers at six leaf stage, 3rd internode88.832486.2301106.303385.511
CAR5Developing grain, bracts removed (5 DPA)365.336388.807359.317486.005
CAR15Developing grain, bracts removed (15 DPA)130.422126.643121.708367.978



CDS Structure of MLOC_39391






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39391.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252910.1NoneNoneNoneNone
MLOC_39391.1CUST_2532_PI427708080AvailableAvailablecontig_2553208 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g38260.1 -2 7e-87 264 183/187 (98%) 13103.m04154 protein 60S ribosomal protein L19-3, putative, expressed
TAIR PP10 AT3G16780.1 -2 1e-78 242 162/185 (88%) Ribosomal protein L19e family protein | chr3:5708982-5710249 FORWARD LENGTH=209