MLOC_39328 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.634122.978322.803738.6014
LEAShoots from the seedlings (10 cm shoot stage)18.47592.399615.9129610.3683
INF1Young developing inflorescences (5mm)13.364113.203912.773316.2257
INF2Developing inflorescences (1-1.5 cm)9.3678713.79213.151820.4497
ROORoots from the seedlings (10 cm shoot stage)23.458516.941111.252724.2613
NODDeveloping tillers at six leaf stage, 3rd internode6.063987.12350.57114315.8581
CAR5Developing grain, bracts removed (5 DPA)33.741335.887636.227545.9945
CAR15Developing grain, bracts removed (15 DPA)2.9042.255972.258867.38767



CDS Structure of MLOC_39328






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39328.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374224NoneNoneNoneNone
MLOC_39328.2CUST_2529_PI427708080AvailableAvailablecontig_2553047 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g30486.1 +3 2e-75 240 134/202 (66%) 13109.m03058 protein fasciclin domain containing protein, expressed
TAIR PP10 AT2G04780.2 +3 9e-58 192 95/150 (63%) | Symbols: FLA7 | FASCICLIN-like arabinoogalactan 7 | chr2:1677488-1678252 FORWARD LENGTH=254