MLOC_39318 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.59145.459437.387844.1158
LEAShoots from the seedlings (10 cm shoot stage)7.6118477.144131.92665.8625
INF1Young developing inflorescences (5mm)000.03231920.0320096
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)36.952637.488713.829543.7222
NODDeveloping tillers at six leaf stage, 3rd internode00.04883780.0519160.222639
CAR5Developing grain, bracts removed (5 DPA)0.0975290.2164060.1240740.177182
CAR15Developing grain, bracts removed (15 DPA)5.077415.870942.1698413.1153



CDS Structure of MLOC_39318






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39318.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365511NoneNoneNoneNone
MLOC_39318.1CUST_2528_PI427708080AvailableAvailablecontig_2553017 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g45960.1 +3 3e-113 337 160/206 (78%) 13103.m04938 protein thaumatin, putative, expressed
TAIR PP10 AT4G11650.1 +3 7e-81 253 118/214 (55%) | Symbols: ATOSM34, OSM34 | osmotin 34 | chr4:7025127-7026113 REVERSE LENGTH=244