MLOC_39291 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.532224.007483.594224.47329
LEAShoots from the seedlings (10 cm shoot stage)0.3839110.1795140.8228530.361813
INF1Young developing inflorescences (5mm)0.0375729000.034137
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)13.75915.577227.420877.23019
NODDeveloping tillers at six leaf stage, 3rd internode0.8839820.6787580.3305691.40782
CAR5Developing grain, bracts removed (5 DPA)0.1478250.4198540.5640130.373061
CAR15Developing grain, bracts removed (15 DPA)2.553531.949172.481285.80431



CDS Structure of MLOC_39291






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39291.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39291.1CUST_11751_PI427708080AvailableAvailablecontig_2552923 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13330.1 -1 4e-88 269 162/201 (81%) 13102.m01479 protein bet v I allergen family protein, putative
TAIR PP10 AT2G26040.1 -1 2e-65 209 116/178 (65%) | Symbols: PYL2, RCAR14 | PYR1-like 2 | chr2:11094832-11095404 REVERSE LENGTH=190