MLOC_39224 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.799261.957632.302851.29705
LEAShoots from the seedlings (10 cm shoot stage)2.810992.250181.567211.42801
INF1Young developing inflorescences (5mm)1.847592.973733.606711.36042
INF2Developing inflorescences (1-1.5 cm)6.881664.73285.148324.59634
ROORoots from the seedlings (10 cm shoot stage)0.7467660.7071010.4814440.580187
NODDeveloping tillers at six leaf stage, 3rd internode0.2585160.7172270.9009941.73211
CAR5Developing grain, bracts removed (5 DPA)1.684453.487714.026341.88583
CAR15Developing grain, bracts removed (15 DPA)3.084382.803555.44235.05718



CDS Structure of MLOC_39224






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39224.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39224.1CUST_12295_PI427708083AvailableAvailablecontig_255267 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13130.1 -3 3e-15 70 36/47 (77%) 13102.m01454 protein KH domain-containing protein, putative, expressed
TAIR PP10 AT2G25970.1 -3 9e-13 67 34/47 (72%) KH domain-containing protein | chr2:11071844-11075604 REVERSE LENGTH=632