MLOC_39192 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains144.56881.713296.9548102.751
LEAShoots from the seedlings (10 cm shoot stage)55.26837.340672.567846.3719
INF1Young developing inflorescences (5mm)32.418743.104639.452833.7024
INF2Developing inflorescences (1-1.5 cm)21.017326.224817.076524.9677
ROORoots from the seedlings (10 cm shoot stage)151.86369.237572.794994.6836
NODDeveloping tillers at six leaf stage, 3rd internode100.704112.32893.5653327.117
CAR5Developing grain, bracts removed (5 DPA)31.660934.034429.001231.3602
CAR15Developing grain, bracts removed (15 DPA)6.713557.740546.2329816.7827



CDS Structure of MLOC_39192






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39192.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249895.1NoneNoneNoneNone
MLOC_39192.1CUST_2523_PI427708080AvailableAvailablecontig_2552535 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g20660.1 -3 1e-66 204 97/108 (90%) 13109.m01965 protein UPF0041 domain containing protein, putative, expressed
TAIR PP10 AT5G20090.2 -3 6e-62 192 90/106 (85%) Uncharacterised protein family (UPF0041) | chr5:6787246-6788000 REVERSE LENGTH=110