MLOC_39177 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.466619.728517.306915.1339
LEAShoots from the seedlings (10 cm shoot stage)9.074253.834386.309895.23072
INF1Young developing inflorescences (5mm)48.070445.235437.906631.1999
INF2Developing inflorescences (1-1.5 cm)32.434328.008528.682727.3483
ROORoots from the seedlings (10 cm shoot stage)5.6134614.933916.492113.4811
NODDeveloping tillers at six leaf stage, 3rd internode0.3482480.3123450.7373481.17195
CAR5Developing grain, bracts removed (5 DPA)18.859418.690621.699915.5312
CAR15Developing grain, bracts removed (15 DPA)3.304413.648553.097286.1322



CDS Structure of MLOC_39177






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39177.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39177.1CUST_11740_PI427708080AvailableAvailablecontig_2552491 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18840.1 -3 0.0 585 299/393 (76%) 13103.m02257 protein NUC189 domain containing protein, expressed
TAIR PP10 AT5G11240.1 -3 2e-82 270 161/396 (41%) transducin family protein / WD-40 repeat family protein | chr5:3582949-3586782 FORWARD LENGTH=615