MLOC_39100 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)000.0933790.0857691
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.0497489000.0607548
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.04998480.039127900.178851
CAR5Developing grain, bracts removed (5 DPA)0.243690.4997940.7913880.478918
CAR15Developing grain, bracts removed (15 DPA)6.606157.814796.2385215.6285



CDS Structure of MLOC_39100






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39100.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39100.1CUST_5461_PI427708083AvailableAvailablecontig_2552260 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g41720.1 -3 8e-93 290 163/188 (87%) 13101.m04280 protein conserved hypothetical protein
TAIR PP10 AT1G29820.2 -3 5e-76 245 132/185 (71%) Magnesium transporter CorA-like family protein | chr1:10438219-10440625 FORWARD LENGTH=540