- Predicted Gene MLOC_39098
MLOC_39098 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_39098_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_39098_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 34.9576 | 60.596 | 56.6958 | 61.3702 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 70.5587 | 58.3838 | 47.9137 | 58.1469 |
INF1 | Young developing inflorescences (5mm) | 139.92 | 118.161 | 111.383 | 111.034 |
INF2 | Developing inflorescences (1-1.5 cm) | 144.93 | 155.848 | 141.076 | 177.112 |
ROO | Roots from the seedlings (10 cm shoot stage) | 12.3776 | 23.4875 | 22.2306 | 33.0226 |
NOD | Developing tillers at six leaf stage, 3rd internode | 28.2724 | 34.4356 | 32.1886 | 136.129 |
CAR5 | Developing grain, bracts removed (5 DPA) | 63.0007 | 60.1349 | 64.7214 | 67.3637 |
CAR15 | Developing grain, bracts removed (15 DPA) | 27.0538 | 25.666 | 22.5677 | 61.6723 |
CDS Structure of MLOC_39098
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_39098.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g48010.1 |
+3 |
0.0 |
777 |
483/708 (68%) |
13102.m05420 protein nuclear matrix constituent protein 1-like, putative, expressed |
TAIR PP10 |
AT1G67230.1 |
+3 |
2e-34 |
142 |
195/730 (27%) |
| Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132 |