MLOC_39098 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.957660.59656.695861.3702
LEAShoots from the seedlings (10 cm shoot stage)70.558758.383847.913758.1469
INF1Young developing inflorescences (5mm)139.92118.161111.383111.034
INF2Developing inflorescences (1-1.5 cm)144.93155.848141.076177.112
ROORoots from the seedlings (10 cm shoot stage)12.377623.487522.230633.0226
NODDeveloping tillers at six leaf stage, 3rd internode28.272434.435632.1886136.129
CAR5Developing grain, bracts removed (5 DPA)63.000760.134964.721467.3637
CAR15Developing grain, bracts removed (15 DPA)27.053825.66622.567761.6723



CDS Structure of MLOC_39098






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39098.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39098.1CUST_11733_PI427708080AvailableAvailablecontig_2552256 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g48010.1 +3 0.0 777 483/708 (68%) 13102.m05420 protein nuclear matrix constituent protein 1-like, putative, expressed
TAIR PP10 AT1G67230.1 +3 2e-34 142 195/730 (27%) | Symbols: LINC1 | little nuclei1 | chr1:25151561-25156032 REVERSE LENGTH=1132