MLOC_39065 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.488142.613440.674344.2187
LEAShoots from the seedlings (10 cm shoot stage)36.973332.215636.031832.1737
INF1Young developing inflorescences (5mm)101.616110.779115.69393.3223
INF2Developing inflorescences (1-1.5 cm)105.536103.61695.2722113.698
ROORoots from the seedlings (10 cm shoot stage)24.684635.928429.102344.2944
NODDeveloping tillers at six leaf stage, 3rd internode15.129127.874235.8184105.418
CAR5Developing grain, bracts removed (5 DPA)51.136351.394954.486451.8768
CAR15Developing grain, bracts removed (15 DPA)18.527115.600716.911539.0883



CDS Structure of MLOC_39065






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39065.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39065.1CUST_11729_PI427708080AvailableAvailablecontig_2552177 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g07050.1 +2 0.0 1025 494/517 (96%) 13105.m00763 protein pre-mRNA-processing-splicing factor 8, putative, expressed
TAIR PP10 AT1G80070.1 +2 0.0 950 451/517 (87%) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359