MLOC_39021 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.53197.158727.225466.26335
LEAShoots from the seedlings (10 cm shoot stage)10.640210.01417.098137.45829
INF1Young developing inflorescences (5mm)9.244449.554419.392857.15547
INF2Developing inflorescences (1-1.5 cm)9.846529.7601810.37849.81338
ROORoots from the seedlings (10 cm shoot stage)6.14379.991258.9378610.2863
NODDeveloping tillers at six leaf stage, 3rd internode10.81374.848193.4923714.1722
CAR5Developing grain, bracts removed (5 DPA)6.095315.441416.29325.11705
CAR15Developing grain, bracts removed (15 DPA)5.150695.021885.4713810.6837



CDS Structure of MLOC_39021






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_39021.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_39021.1CUST_12288_PI427708083AvailableAvailablecontig_2552052 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29590.1 +2 6e-31 126 61/87 (70%) 13108.m03058 protein zinc finger, C3HC4 type family protein, expressed
TAIR PP10 AT1G11020.1 +2 3e-21 96 53/88 (60%) RING/FYVE/PHD zinc finger superfamily protein | chr1:3676968-3678350 FORWARD LENGTH=321