- Predicted Gene MLOC_38969
MLOC_38969 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_38969_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_38969_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 3.07039 | 5.52777 | 4.89887 | 4.40887 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 39.7789 | 59.8971 | 56.4595 | 42.2332 |
INF1 | Young developing inflorescences (5mm) | 10.941 | 9.97642 | 8.38777 | 7.59943 |
INF2 | Developing inflorescences (1-1.5 cm) | 8.1806 | 7.69368 | 9.22551 | 8.3063 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.06453 | 4.39439 | 4.61797 | 4.86946 |
NOD | Developing tillers at six leaf stage, 3rd internode | 14.0797 | 15.1887 | 22.2673 | 53.2612 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.6504 | 11.2489 | 11.1725 | 10.1674 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.6398 | 2.72004 | 2.94718 | 5.46909 |
CDS Structure of MLOC_38969
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_38969.11
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g36240.3 |
-1 |
0.0 |
817 |
449/564 (80%) |
13109.m03564 protein deoxyribodipyrimidine photolyase family protein, expressed |
TAIR PP10 |
AT4G25290.1 |
-1 |
7e-159 |
480 |
270/564 (48%) |
DNA photolyases;DNA photolyases | chr4:12941486-12944994 REVERSE LENGTH=692 |