MLOC_38969 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.070395.527774.898874.40887
LEAShoots from the seedlings (10 cm shoot stage)39.778959.897156.459542.2332
INF1Young developing inflorescences (5mm)10.9419.976428.387777.59943
INF2Developing inflorescences (1-1.5 cm)8.18067.693689.225518.3063
ROORoots from the seedlings (10 cm shoot stage)3.064534.394394.617974.86946
NODDeveloping tillers at six leaf stage, 3rd internode14.079715.188722.267353.2612
CAR5Developing grain, bracts removed (5 DPA)11.650411.248911.172510.1674
CAR15Developing grain, bracts removed (15 DPA)2.63982.720042.947185.46909



CDS Structure of MLOC_38969






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38969.11
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK366032NoneNoneNoneNone
MLOC_38969.11CUST_2515_PI427708080AvailableAvailablecontig_2551897 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g36240.3 -1 0.0 817 449/564 (80%) 13109.m03564 protein deoxyribodipyrimidine photolyase family protein, expressed
TAIR PP10 AT4G25290.1 -1 7e-159 480 270/564 (48%) DNA photolyases;DNA photolyases | chr4:12941486-12944994 REVERSE LENGTH=692