MLOC_38930 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains37.368221.000218.866422.1125
LEAShoots from the seedlings (10 cm shoot stage)7.014231.380171.365052.57708
INF1Young developing inflorescences (5mm)63.849195.410786.503768.0991
INF2Developing inflorescences (1-1.5 cm)67.037679.87670.097677.0584
ROORoots from the seedlings (10 cm shoot stage)45.428323.482624.562425.5565
NODDeveloping tillers at six leaf stage, 3rd internode1.328861.163310.2013832.32012
CAR5Developing grain, bracts removed (5 DPA)87.748783.095282.014677.3008
CAR15Developing grain, bracts removed (15 DPA)3.577432.055283.576357.23559



CDS Structure of MLOC_38930






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38930.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38930.1CUST_5433_PI427708083AvailableAvailablecontig_2551817 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g47600.1 +3 3e-80 247 114/143 (80%) 13106.m05056 protein thaumatin family domain containing protein, expressed
TAIR PP10 AT1G18250.1 +3 5e-61 196 97/142 (68%) | Symbols: ATLP-1 | Pathogenesis-related thaumatin superfamily protein | chr1:6277024-6278005 REVERSE LENGTH=243