MLOC_38901 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.827645.086254.921325.10098
LEAShoots from the seedlings (10 cm shoot stage)4.666872.382642.394552.53267
INF1Young developing inflorescences (5mm)5.729427.793167.035715.15475
INF2Developing inflorescences (1-1.5 cm)5.597917.384756.635596.55023
ROORoots from the seedlings (10 cm shoot stage)6.098864.710423.179895.1768
NODDeveloping tillers at six leaf stage, 3rd internode3.135923.94884.2865712.0077
CAR5Developing grain, bracts removed (5 DPA)3.580623.942934.1463.39104
CAR15Developing grain, bracts removed (15 DPA)3.121172.180242.926185.84517



CDS Structure of MLOC_38901






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38901.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38901.1CUST_17663_PI427708080AvailableAvailablecontig_2551718 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g55360.1 +1 0.0 667 321/370 (87%) 13104.m05739 protein ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
TAIR PP10 AT5G10790.1 +1 3e-143 432 216/379 (57%) | Symbols: UBP22 | ubiquitin-specific protease 22 | chr5:3410638-3412559 FORWARD LENGTH=557