MLOC_38891 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.552115.515723.16415.0521
LEAShoots from the seedlings (10 cm shoot stage)15.693815.408514.142210.3098
INF1Young developing inflorescences (5mm)9.4507112.58113.85069.23741
INF2Developing inflorescences (1-1.5 cm)19.219915.24816.916617.4405
ROORoots from the seedlings (10 cm shoot stage)43.402129.929354.195232.4096
NODDeveloping tillers at six leaf stage, 3rd internode27.825932.720534.104778.6905
CAR5Developing grain, bracts removed (5 DPA)28.397323.079930.467324.3172
CAR15Developing grain, bracts removed (15 DPA)11.339211.271612.235625.9364



CDS Structure of MLOC_38891






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38891.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_38891.1CUST_12286_PI427708083AvailableAvailablecontig_2551674 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g15000.1 +3 4e-44 160 94/144 (65%) 13103.m01752 protein Zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT3G09770.2 +3 3e-26 107 61/103 (59%) RING/U-box superfamily protein | chr3:2996629-2997835 REVERSE LENGTH=341