- Predicted Gene MLOC_38890
- Gene IDMLOC_38890
- Source Contig contig_2551659
MLOC_38890 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
There are no FPKM-by-treatment values calculated for this gene. | ![]() |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 0.424656 | 1.14503 | 0.294626 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.173362 | 0.181386 | 0.292891 | 0 |
INF1 | Young developing inflorescences (5mm) | 3.45475 | 4.00906 | 3.09738 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 3.67802 | 4.41496 | 4.07704 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 1.62507 | 0.955756 | 0.347825 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0914638 | 0.270386 | 1.36579 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 1.21653 | 1.44893 | 1.69694 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.224305 | 0.229097 | 0.332398 | 0 |
CDS Structure of MLOC_38890
![](/morexGenes/blast_net_images/MLOC_38890_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK356167
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK356167 | CUST_19624_PI427708080 | None | None | None |
MLOC_29765.1 | None | Available | None | contig_2035179 (Not mapped) |
MLOC_30754.1 | None | Available | None | contig_2123438 (Not mapped) |
MLOC_31527.1 | None | Available | None | contig_2198182 (Not mapped) |
MLOC_32933.1 | None | Available | None | contig_2330526 (Not mapped) |
MLOC_33012.1 | None | Available | None | contig_2337217 (Not mapped) |
MLOC_33870.1 | None | Available | None | contig_2410530 (Not mapped) |
MLOC_34335.1 | None | Available | None | contig_2435919 (Not mapped) |
MLOC_38890.1 | None | Available | None | contig_2551659 (Not mapped) |
MLOC_42246.1 | None | Available | None | contig_2633149 (Not mapped) |
MLOC_43581.1 | None | Available | None | contig_271459 (Mapped) |
MLOC_48741.1 | None | Available | Available | contig_328857 (Mapped) |
MLOC_68961.1 | None | Available | None | contig_556477 (Not mapped) |
MLOC_75544.1 | None | Available | None | contig_681862 (Not mapped) |
MLOC_75800.1 | None | Available | None | contig_6898 (Mapped) |
MLOC_77660.1 | None | Available | None | contig_766286 (Not mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |