MLOC_38823 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains432.577372.541432.277416.483
LEAShoots from the seedlings (10 cm shoot stage)91.1852253.11856.4572108.718
INF1Young developing inflorescences (5mm)32.63436.080661.921740.5608
INF2Developing inflorescences (1-1.5 cm)7.159024.0528311.95458.3952
ROORoots from the seedlings (10 cm shoot stage)160.118222.462105.772230.85
NODDeveloping tillers at six leaf stage, 3rd internode54.62350.8599710.04898981.94481
CAR5Developing grain, bracts removed (5 DPA)467.726303.771373.123402.54
CAR15Developing grain, bracts removed (15 DPA)0.8123291.037251.981993.26841



CDS Structure of MLOC_38823






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_38823.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368835NoneNoneNoneNone
MLOC_38823.1CUST_2506_PI427708080AvailableAvailablecontig_2551489 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37910.2 -3 6e-83 267 168/358 (47%) 13112.m03903 protein GDSL-like lipase/acylhydrolase, putative, expressed
TAIR PP10 AT5G33370.1 -3 3e-46 167 124/345 (36%) GDSL-like Lipase/Acylhydrolase superfamily protein | chr5:12602773-12604670 REVERSE LENGTH=366